Function reference • extremeR

Prepare data

Function to prepare data in format required for estimation procedure

data.prep(): Prepare data

Estimate model

Function to estimate a Bayesian case-control model.

fit(): Function to estimate a Bayesian case-control model.

Run simulations

Function to simulate data from a relevant data generating process (DGP)

dgf(): Simulate data generating process

Shapefile data

Shapefile data for dgf() function and main case-control examples.

scotland: Shapefile data for dgf() function: scotland

pennLC: Shapefile data for dgf() function: Penn

NYleukemia: Shapefile data for dgf() function: New York

shape_egypt: Shapefile data for Egypt

Case-control data

Example case-control data.

survey_egypt: Case-control data for Egypt ISIS cases and controls

denom_mena: Denominator data for MENA countries

data.list: Formatted shape and case-control data for Egypt ISIS cases and controls

mon_egypt: Monitor object from rstan::mon() of class "simsummary" "data.frame"

Helper functions

Helper functions to check graph connected. Created by Mitzi Morris [here]*(https://github.com/stan-dev/example-models/blob/master/knitr/car-iar-poisson/nb_data_funs.R)

testconnected(): Test graph connected

isdisconnected(): Check graph disconnected